Thonis-Heracleion sat on soft, waterlogged sediment at the mouth of the Canopic branch of the Nile — ground that had always been unstable, and that grew more so as the weight of temples, harbour works and centuries of accumulated buildings pressed down on it. Archaeologists now believe the city's end came through a combination of gradual land subsidence, soil liquefaction possibly triggered by earthquake activity, and a rising Mediterranean sea level, rather than any single catastrophic night.
The Greek historian Herodotus, writing in the 5th century BCE, describes Thonis as the mandatory entry port for the Nile, where a great temple to Herakles stood — the same temple in which, according to a later legend, Helen and Paris supposedly stopped en route to Troy, delaying their journey long enough for the priests to record it. Diodorus Siculus and inscribed temple decrees confirm the city's importance for centuries after Herodotus. By the 2nd century BCE, the rise of nearby Alexandria had already begun to eclipse it; by the 8th century CE, the sea had finished the job.